CCP4I DOWNLOAD

Note that not all tasks have prerequisities defined, and for these tasks the user may still launch them even though programs required may be missing. Failure is probably because it can not find the bltwish executable invoked at the top of the script. The Interface will run jobs on other machines on the same network which can see the same filesystem, using either the rsh or the ssh command. You should enter the command that you use locally to do this. I would appreciate hearing from anyone who has problems with fonts on different machine types so we can try to avoid them in future. The jobs should still run okay however, and when you restart the main CCP4i it will automatically check the log file for any job that it believes are still running and figure out that they have finished. When you have finished you should save the information to the installation file.

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The default conversion programs are: It should be set to ccp4ishthere are currently no alternatives. For Netscape it checks to see whether there is a locally running version of the browser, and starts one using the command given in this option if not. It can also be accessed using the Configure Cfp4i button on the bottom right of the Main Window.

If you are moving old-style 'monster' MTZ files then you will be asked to select the appropriate columns. This can be irritating but should be solved by opening the page a second time.

The interface, christened ccp4iwas first made publicly available sometime inand has been released as an official part of the main CCP4 suite since March CCP4 4. The Test button at the bottom of this window has options to test how well the Interface interacts with the various resources.

A user should also ensure that they do not introduce any additional spaces in the names of any files or subdirectories contained within the PROJECT directory.

CCP4i: The CCP4 Graphical User Interface

This value can be cxp4i for your version of Mapman by running the program and noting cxp4i value for 'Max nr of points in map'. A number of new projects are currently being planned, some of which are described briefly on a separate CCP4i Projects page.

Bug in CCP4i script Currently O and Quanta formats are handled. I am happy to add conversions for other graphics programs but will need information from you on the command string required to run the conversion program.

You should enter a list of the machines which users are encouraged to run large jobs on. CCP4i scripts will include an appropriate command if ccp4o map exceeds the value given here. If this is inappropriate for your system, you will need to edit the local. There is also a Copy option on the file context menu and a Paste option on the file input icon menu.

CCP4: Software for Macromolecular Crystallography

As of CCP4 4. Old CCP4i did not make copies of input data files in the project directory but this interface has the option to Collect input files on the project context menu. It is possible to associate an old CCP4i project with a CCP4i2 project and then the jobs and files for the old project are listed in a tab in the project viewer for the new project. This problem appears to have been the result of originally setting up the project in 4.

When the mouse moves over a widget in a CCP4i window, any associated help text will be displayed in ccpi4 "message line" at the top of ccl4i window.

The Interface needs to be configured to make use of other non-CCP4 software on your system and to provide easy access to hardware such as printers and remote machines or batch queues. After a delay, or if there is already a version running, then it tries to display the HTML file using the ' netscape -remote ' option you can read about this by entering ' netscape -help ' on the command line or look at the Netscape help on this topic.

This should only happen for the very first run of Arp, and contrary to appearances is not an error in the script. If tclsh is not present then jobs may start but never actually run.

Individual users can choose the preferred output map format in the Preferences window - if most users on your site are liable to have the same preference then the system manager could set the installation default in the Preferences window accessed from menu on the right-hand side of the main CCP4i window. The Interface Run Remote command definitely will not work across any connection that either of these commands are unable to work across.

CCP4i Chart Interface

Once the loggraph window in displayed you should do the following:. Collaborative Computational Project No. In most cases this should not make any difference when using the interfaces, however check buttons under 8. The ccp4iwish executable link was removed after version 6. List of Problems Cannot execute "ccp4iwish": This folder contains options to allow the user to select a colour scheme for the display of jobs in the main CCP4i window.

If you change any of the parameters in the window, you should save them to file using the Save button before trying any of the Test options. This currently assumes the use of Netscape but can ccp4i alternative hypertext viewers.